Download ncbi blast windows

These utilities run through DOS-like command windows and accept input through text-based command line switches. There is no graphic user interface. The archive ncbi-blast-. Here, the ". Archives with the same base name and version number are equivalent. Please note that the archive with the ". The discussion below focuses on archives with the ". These steps for the "ncbi-blast Double click the file to launch the installer, accept the license agreement to specify the install location in a new prompt.

Clicking the "Install" button, the installer will create this directory and install the following:. View in own window. Databases can also be prepared de novo from custom FASTA sequences locally using the makeblastdb utility.

Use WinZip, 7-Zip, or other decompression utility to inflate the compressed archive first, then extract the files from the resulting archive. Note that the above steps download and install a database with a single volume. Large databases, such as nt, are provided as multi-volume sets.

Get compressed archives with the same base name with different ". The database alias file, such as nt. Also, for multi-volume databases, extra files enabling version 5 functionalities are only provided in the first volume. Right click on the inflated.

The base command is:. This configuration is through information stored in special user environment variables. For 2. Screen shots of these steps are shown, with the first two steps in Figure 4a , and the rest in Figure 4b. Clicking more Click the icon to launch it. Test the installation before using this installation for actual work. The test commands groups into three categories:.

Technically, there are three components for a blast search, the input query , the target database, and the blast program. The test session below includes a set of representative commands, each testing a specific aspect of this example installation. First section is on general checking and execution with marked command matching examples in Figure 6A. Retrieve a sequence from this database for use as a test query E :. Run a nucleotide search using blastn and the test query sequence G :.

The following focuses on database manipulation and example session is in Figure 6b. The output of a work session focusing on database management and creation: The input commands are underlined with their function explained by inserted text.

Take advantage of the installed swissprot database to retrieve set of sequences from it and save them to a file L for use as example input. Turn recording back on. National Center for Biotechnology Information , U. Search term. Author Information Tao Tao , Ph. NCBI Email: vog. One example is shown below. Extract downloaded tar. If you don't have such a software, 7-zip is convenient.

File name is assumed to be testdb. Copy testdb. Open command prompt. Type "makeblastdb -in testdb. Type "makeblastdb -help" for advanced options. These database files are assumed to be downloaded already. All Rights Reserved. Begin a free trial by filling out this form.